Table 5 Components of Methods Examined in Follow-Up Analysis. The table gives abbreviations for the methods in Table 2 that are studied in the follow-up analysis. These abbreviations are used in RESULTS and Figures 6–9.
From: Evaluation of methods for oligonucleotide array data via quantitative real-time PCR
Method | Background Adjustment | Normalization | Mismatch adjustment | Probeset Summary | Reference |
|---|---|---|---|---|---|
MAS5 | BA-RA | constant | adjustedMM | TukeyAverage | [17] |
gcRMA | BA-GC | quantile | PMonly | medianpolish | [9] |
dChip.mm | BA-none | invariantset | subtractMM | Li-Wong | [19] |