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Figure 5 | BMC Bioinformatics

Figure 5

From: Simplifying gene trees for easier comprehension

Figure 5

Screenshot of the TreeSimplifier application. Here, a POU transcription factor tree is compressed to 74 leaves, by treating all species from the Amniota clade as equivalent. On the left, the tree is visualized in a hyperbolic way. On the right, the rule manager panel is shown. It includes a "species replacer rule" that relabels all Amniota species, a "monophylum compressor rule" that uses the NCBI tree modified so that Amniota is a species leaf, and a "paraphylum compressor rule".

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