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Figure 2 | BMC Bioinformatics

Figure 2

From: K-SPMM: a database of murine spermatogenic promoters modules & motifs

Figure 2

The module output for the promoter region of Protamine 2. The graphical output for Transfac PWMs is shown above the graphical and tabular output for JASPAR in which one potential binding domain has been highlighted. Regions noted as 1–5 have been added and correspond to the location of in vitro protected foot-printed sites proximate to the TSS [23]. An alternate representation of sequence conservation within the domain has been included from the vertebrate conservation track from the UCSC Genome Browser. This illustrates more fully the extent of alignment between conserved nucleotides and the predicted binding sequences, as such it is similar to the conservation data tabulated for four comparator species in the evidence table.

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