Skip to main content

Table 2 Number of GO terms in each Venn categories for the multi-cluster analysis.

From: Combining evidence, biomedical literature and statistical dependence: new insights for functional annotation of gene sets

  Venn categories
Clusters GOA GOA+DEP GOA+PUB ALL PUB+DEP PUB DEP
Iron metabolism:        
Down 11 35 4 19 63 173 542
Up 11 20 3 12 28 163 301
Glioblastomas:        
glioGBM 17 12 2 6 20 144 255
glioPRIM 16 41 7 8 56 219 410
glioSEC 6 19 2 13 23 107 241
Circadian Rhythms:        
circ 11 38 10 20 55 191 342
Human fetal lung:        
lung 10 21 2 3 10 88 247
Human retinal pigment epithelium:        
arpe19 3 12 0 2 10 31 180
rpe 10 37 9 9 35 177 419
Alzeimers disease:        
alzheimer 33 69 14 56 182 497 596
Acute lymphoblastic leukemias:        
bcr-abl 13 38 5 12 54 163 383
hyperdiploid 13 32 7 11 37 186 347
novel 9 21 1 9 26 119 319
tel-aml1 11 37 4 7 37 153 389
  1. † Venn categories: GOA (Evidence), PUB (Literature), DEP (Associative relations) and overlaps between them (GOA+PUB, GOA+DEP, PUB+DEP, ALL = GOA+PUB+DEP).