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Table 2 Number of GO terms in each Venn categories for the multi-cluster analysis.

From: Combining evidence, biomedical literature and statistical dependence: new insights for functional annotation of gene sets

 

Venn categories†

Clusters

GOA

GOA+DEP

GOA+PUB

ALL

PUB+DEP

PUB

DEP

Iron metabolism:

       

Down

11

35

4

19

63

173

542

Up

11

20

3

12

28

163

301

Glioblastomas:

       

glioGBM

17

12

2

6

20

144

255

glioPRIM

16

41

7

8

56

219

410

glioSEC

6

19

2

13

23

107

241

Circadian Rhythms:

       

circ

11

38

10

20

55

191

342

Human fetal lung:

       

lung

10

21

2

3

10

88

247

Human retinal pigment epithelium:

       

arpe19

3

12

0

2

10

31

180

rpe

10

37

9

9

35

177

419

Alzeimers disease:

       

alzheimer

33

69

14

56

182

497

596

Acute lymphoblastic leukemias:

       

bcr-abl

13

38

5

12

54

163

383

hyperdiploid

13

32

7

11

37

186

347

novel

9

21

1

9

26

119

319

tel-aml1

11

37

4

7

37

153

389

  1. † Venn categories: GOA (Evidence), PUB (Literature), DEP (Associative relations) and overlaps between them (GOA+PUB, GOA+DEP, PUB+DEP, ALL = GOA+PUB+DEP).