Table 1 Computational time chart. Table 1 shows the computation time taken by the program running on a Pentium IV 2.5 GHz machine, for comparing various genome sequences.
From: Chaos game representation for comparison of whole genomes
Organisms | Length A(In base pairs) | Length B(In base pairs) | Time (forward strand) in seconds | Time (reverse complement) in seconds |
|---|---|---|---|---|
HIV vs CIV | 9229 | 9811 | <1 | 1 |
P. Abyssi vs P. Horikoshii | 1765118 | 1738505 | 24 | 27 |
E. coli O157:H7 vs E. coli K12 | 5498450 | 4639675 | 68 | 156 |
R. p. Madrid E vs R. c. Malish 7 | 1111523 | 1268755 | 18 | 24 |
M. tuberculosis H37Rv vs M. leprae TN | 4411532 | 3268203 | 119 | 120 |
M. bovis AF2122 vs M.tuberculosis H37Rv | 4345492 | 4411532 | 10 | 230 |
M. tuberculosis H37Rv vs M. tuberculosis CDC1551 | 4411532 | 4403662 | 6 | 232 |