Chaos game representation for comparison of whole genomes

BMC Bioinformatics

Table 2 Sample alignment list.A sample list of all local alignments between two sequences in the order of their position in the sequence A is shown in Table 2:

Order in A	StartA	EndA	Order in B	StartB	EndB	Length
0	8127	8158	0	9402	9433	31
1	10846	10920	1	12193	12267	74
2	11125	11158	2	12446	12479	33
3	18260	18296	3	20577	20613	36
4	20041	20109	4	22402	22470	68
5	20923	20975	5	23284	23336	52
6	21233	21284	6	23594	23645	51
7	23591	23622	7	25970	26001	31
8	26750	26835	8	28887	28972	85
9	53377	53437	9	37193	37253	60
10	67041	67072	84	493374	493405	31
11	67200	67231	85	493533	493564	31
12	143809	143840	262	2932826	2932857	31
---	------	------	-------	-------	-------	-------

ISSN: 1471-2105