Table 1 Example of genes from different classesThree genes from each of the 4 classes were selected to illustrate their expression patterns. P_F: P values for the overall F test; P_t: P values at their initial responses; FC: fold changes at their initial responses, where a negative sign indicates down-regulation.
From: Identification of gene expression patterns using planned linear contrasts
Class | Gene | P_F | P_t | FC | Gene Function |
|---|---|---|---|---|---|
I | Pdcd5 | 5.40E-03 | 6.30E-04 | 1.2 | apoptosis |
| Â | Cetn3 | 7.40E-05 | 3.10E-04 | 1.2 | Ca binding |
| Â | Kit | 3.40E-03 | 5.30E-04 | 1.4 | growth factor |
II | Ccl2 | 3.20E-05 | 3.70E-04 | 4.1 | chemotaxis |
| Â | Csf3 | 6.30E-03 | 5.80E-04 | 3.2 | growth factor |
| Â | Bub3 | 2.10E-04 | 1.20E-04 | 1.2 | cell cycle |
III | Omp | 1.40E-04 | 1.60E-05 | -1.6 | marker protein |
| Â | Ptdss2 | 9.00E-05 | 8.00E-04 | -1.4 | enzymatic activity |
| Â | Tfrc | 2.10E-03 | 3.60E-04 | 2.1 | endocytosis |
IV | Casp6 | 4.50E-03 | 6.60E-04 | -1.4 | Apoptosis |
| Â | Cd68 | 4.40E-04 | 2.90E-05 | 2 | macrophage marker |
| Â | Slfn4 | 1.50E-04 | 7.30E-06 | 4 | cell cycle |