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Figure 2 | BMC Bioinformatics

Figure 2

From: Optimizing amino acid substitution matrices with a local alignment kernel

Figure 2

Comparison of C values for the LA kernel and the the SW algorithm. In the graph, LA indicates C values of the LA kernel with BLOSUM62LAOPT, and SW indicates C values of the SW algorithm with BLOSUM62SWOPT. If the two methods perform equally, every point would be aligned along the diagonal. More points distributed in the upper-left triangle shows the better performance of the LA kernel with BLOSUM62LAOPT.

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