From: Optimizing amino acid substitution matrices with a local alignment kernel
A | 4.5 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R | -0.9 | 5.2 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
N | -1.9 | 0.1 | 5.9 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
D | -2.0 | -2.0 | 1.2 | 6.2 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
C | 0.1 | -3.0 | -3.0 | -3.0 | 9.0 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
Q | -0.9 | 1.0 | 0.0 | 0.1 | -3.0 | 5.1 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
E | -0.8 | 0.1 | 0.1 | 2.1 | -4.0 | 2.1 | 5.0 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
G | 0.2 | -2.0 | 0.1 | -0.9 | -3.0 | -1.9 | -1.8 | 6.3 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
H | -2.0 | 0.0 | 1.1 | -1.0 | -3.0 | -0.0 | 0.1 | -2.0 | 8.0 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
I | -0.8 | -2.9 | -3.0 | -3.1 | -1.0 | -3.0 | -3.1 | -3.9 | -3.0 | 4.0 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
L | -0.8 | -1.9 | -3.0 | -4.0 | -1.0 | -2.0 | -2.9 | -3.9 | -3.0 | 2.6 | 4.4 | Â | Â | Â | Â | Â | Â | Â | Â | Â |
K | -0.8 | 2.3 | 0.0 | -1.0 | -3.0 | 1.2 | 1.1 | -2.0 | -0.9 | -3.0 | -1.9 | 4.8 | Â | Â | Â | Â | Â | Â | Â | Â |
M | -1.0 | -1.0 | -2.0 | -3.0 | -1.0 | 0.0 | -2.0 | -3.0 | -2.0 | 1.2 | 2.1 | -1.0 | 5.0 | Â | Â | Â | Â | Â | Â | Â |
F | -1.9 | -2.9 | -3.0 | -3.0 | -2.0 | -3.0 | -3.0 | -3.0 | -1.0 | 0.2 | 0.3 | -3.0 | 0.0 | 6.1 | Â | Â | Â | Â | Â | Â |
P | -1.0 | -2.0 | -2.0 | -0.9 | -3.0 | -1.0 | -1.0 | -1.9 | -2.0 | -3.0 | -2.9 | -1.0 | -2.0 | -4.0 | 7.1 | Â | Â | Â | Â | Â |
S | 1.3 | -1.0 | 1.1 | 0.1 | -1.0 | 0.1 | 0.1 | 0.2 | -1.0 | -1.9 | -1.9 | -0.0 | -1.0 | -1.9 | -0.9 | 4.0 | Â | Â | Â | Â |
T | 0.2 | -1.0 | 0.1 | -1.0 | -1.0 | -0.9 | -0.9 | -1.9 | -2.0 | -0.9 | -0.8 | -1.0 | -1.0 | -1.9 | -1.0 | 1.1 | 5.1 | Â | Â | Â |
W | -3.0 | -3.0 | -4.0 | -4.0 | -2.0 | -2.0 | -3.0 | -2.0 | -2.0 | -3.0 | -1.9 | -3.0 | -1.0 | 1.0 | -4.0 | -3.0 | -2.0 | 11.1 | Â | Â |
Y | -1.9 | -1.9 | -2.0 | -3.0 | -2.0 | -0.9 | -2.0 | -3.0 | 2.1 | -1.0 | -0.8 | -2.0 | -1.0 | 3.2 | -3.0 | -2.0 | -2.0 | 2.0 | 7.0 | Â |
V | 0.2 | -3.0 | -3.0 | -3.0 | -1.0 | -2.0 | -2.0 | -3.0 | -3.0 | 3.4 | 1.2 | -2.0 | 1.1 | -0.9 | -1.9 | -1.9 | 0.1 | -3.0 | -1.0 | 4.2 |
 | A | R | N | D | C | Q | E | G | H | I | L | K | M | F | P | S | T | W | Y | V |