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Table 2 Similarities values from comparisons between pathway set based tree and trees based on other information. The similarity values range from 0 to 1 (1 being identical topology).

From: Phylophenetic properties of metabolic pathway topologies as revealed by global analysis

  Pathway set based tree Gene content tree (SHOT vs. 1.0) Gene order tree (SHOT vs. 1.0) Gene content tree (SHOT vs. 2.0) Gene order tree (SHOT vs. 2.0) 16S rRNA based tree
Pathway set based tree - 0.409 0.318 0.409 0.295 0.386
Gene content tree (SHOT vs. 1.0)   - 0.613 0.727 0.409 0.545
Gene order tree (SHOT vs. 1.0)    - 0.568 0.363 0.522
Gene content tree (SHOT vs. 2.0)     - 0.477 0.613
Gene order tree (SHOT vs. 2.0)      - 0.340
16S rRNA based tree       -