Table 2 Similarities values from comparisons between pathway set based tree and trees based on other information. The similarity values range from 0 to 1 (1 being identical topology).
From: Phylophenetic properties of metabolic pathway topologies as revealed by global analysis
| Â | Pathway set based tree | Gene content tree (SHOT vs. 1.0) | Gene order tree (SHOT vs. 1.0) | Gene content tree (SHOT vs. 2.0) | Gene order tree (SHOT vs. 2.0) | 16S rRNA based tree |
|---|---|---|---|---|---|---|
Pathway set based tree | - | 0.409 | 0.318 | 0.409 | 0.295 | 0.386 |
Gene content tree (SHOT vs. 1.0) | Â | - | 0.613 | 0.727 | 0.409 | 0.545 |
Gene order tree (SHOT vs. 1.0) | Â | Â | - | 0.568 | 0.363 | 0.522 |
Gene content tree (SHOT vs. 2.0) | Â | Â | Â | - | 0.477 | 0.613 |
Gene order tree (SHOT vs. 2.0) | Â | Â | Â | Â | - | 0.340 |
16S rRNA based tree | Â | Â | Â | Â | Â | - |