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Table 1 List of the identified time-delayed gene regulations for yeast cell cycling. In the bold style are the rules extracted from confident trees and in the regular style are the rules extracted from putative trees.

From: Discovery of time-delayed gene regulatory networks based on temporal gene expression profiling

Gene name Peak phase Time Delayed
   One-unit time Two-unit time Three-unit time Four-unit time Five-unit time
CLN1 G1 +SWI5(t) => -CLN1(t+1) -SWI5(t) => +CLN1(t+1)   -SWI5(t) => +CLN1(t+1) -SWI5(t) => +CLN1(t+1)
CLN2 G1 +CLB1( t ) => -CLN2( t +1) -SIC1(t-1) => -CLN2(t+1) -SIC1(t-1) => -CLN2(t+1) -SIC1(t-1) => -CLN2(t+1) -SIC1(t-1) => -CLN2(t+1)
CLN3 M +CDC53(t) => -CLN3(t+1)     
CLB1 M +CLB6( t ) => -CLB1( t +1) +CLB6(t) => -CLB1(t+1) +CLB6( t ) => -CLB1( t +1)   -CLB5(t-4) => -CLB1(t+1)
CLB2 M +CLB6( t ) => -CLB2( t +1) +CLB6( t ) => -CLB2( t +1) +CLB6(t) => -CLB2(t+1)   -CLB5(t-4) => -CLB2(t+1)
CLB4 G2 -CLN1(t) => -CLB4(t+1) -CLN1(t) => -CLB4(t+1)    -CLB4(t-4) => +CLB4(t+1)
CLB5 G1      
CLB6 G1 -SWI5(t) => +CLB6(t+1)    +CLN3(t-3) => +CLB6(t+1) -CDC20(t-4) => -CLB6(t+1)
MCM1       
SIC1 M/G1 +CLN3(t) => +SIC1(t+1) +CLB2(t-1) => +SIC1(t+1) -CLN2(t-2) => +SIC1(t+1)   +CLB1( t -3) => +SIC1( t +1)
SWI6   -SKP1(t)-CLN2(t) => -SWI6(t+1)     
CDC28   -MBP1(t) => +CDC28(t+1)     -CLB6(t-4) => +CDC28(t+1)
CDC53       
MBP1    +MCM1(t-1) => -MBP1(t+1)   -SKP1(t-3) => +MBP1(t+1)  
CDC34     -CDC34(t-2) => +CDC34(t+1)   -CDC34(t-4) => +CDC34(t+1)
SWI5 M +CLB1( t ) => +SWI5( t +1) -SIC1(t-1) => +SWI5(t+1) -SIC1(t-1) => +SWI5(t+1) -SIC1(t-1) => +SWI5(t+1) -SIC1(t-1) => +SWI5(t+1)
SKP1    -SWI6(t-1) => -SKP1(t+1) +MBP1(t-2) => +SKP1(t+1)   
SWI4 M/G1 +CDC28(t) => +SWI4(t+1)   +CLB2(t-2) => +SWI4(t+1) +CLB2( t -2) => +SWI4( t +1) -CLB5(t-4) => +SWI4(t+1)
CDC20 M -CLB1(t) => -CDC20(t+1) +CLB1( t -1) => +CDC20( t +1) +CLB1(t-1) => +CDC20(t+1) -SWI6(t-3) => -CDC20(t+1) -SWI6(t-3) => -CDC20(t+1)
HCT1