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Table 1 Performance evaluation. NSN: nucleotide sensitivity, NSP: nucleotide specificity, ESN: exon sensitivity, ESP: exon specificity, ME: missed exons, WE: wrong exons. NSN is defined as the percentage of annotated coding bases predicted as coding and NSP as the percentage of predicted coding bases annotated as as coding. ESN and ESP reflect analogously how well the methods predict exons exactly right. Superscripts on the species names indicate the type of generated gene model. 1: Full model. 2: 3' UTR exons and introns not modelled. 3: No UTR exons and introns modelled. 4: UTR exons and introns as well as UTR part of first and last exons not modelled. Subscripts indicate whether shared length distributions are used. 1: No shared distributions. 2: Internal and single coding exons share distribution. 3: all coding coding exons share distribution

From: Automatic generation of gene finders for eukaryotic species

Species Predictor NSN NSP ESN ESP ME WE
C . e l e g a n s 2 3 MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqWGdbWqcqGGUaGlcaaMc8UaemyzauMaemiBaWMaemyzauMaem4zaCMaemyyaeMaemOBa4Maem4Cam3aa0baaSqaaiabikdaYaqaaiabiodaZaaaaaa@3BBA@ Agene 95 92 86 85 5 9
  GeneID 95 86 75 68 6 16
D . m e l a n o g a s t e r 1 1 MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqWGebarcqGGUaGlcaaMc8UaemyBa0MaemyzauMaemiBaWMaemyyaeMaemOBa4Maem4Ba8Maem4zaCMaemyyaeMaem4CamNaemiDaqNaemyzauMaemOCai3aa0baaSqaaiabigdaXaqaaiabigdaXaaaaaa@42A9@ Agene 87 87 64 68 13 15
  Augustus 85 91 67 72 15 11
A . t h a l i a n a 1 1 MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqWGbbqqcqGGUaGlcaaMc8UaemiDaqNaemiAaGMaemyyaeMaemiBaWMaemyAaKMaemyyaeMaemOBa4Maemyyae2aa0baaSqaaiabigdaXaqaaiabigdaXaaaaaa@3CFF@ Agene 85 89 67 74 14 11
  Genscan 82 83 49 51 17 18
N . c r a s s a 1 4 MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqWGobGtcqGGUaGlcaaMc8Uaem4yamMaemOCaiNaemyyaeMaem4CamNaem4CamNaemyyae2aa0baaSqaaiabigdaXaqaaiabisda0aaaaaa@3A83@ Agene 76 95 57 76 25 7
  GeneID 24 95 14 83 76 8
A . n i d u l a n s 2 4 MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqWGbbqqcqGGUaGlcaaMc8UaemOBa4MaemyAaKMaemizaqMaemyDauNaemiBaWMaemyyaeMaemOBa4Maem4Cam3aa0baaSqaaiabikdaYaqaaiabisda0aaaaaa@3D3F@ Agene 84 93 59 70 19 9
  GeneID 88 86 49 50 18 19
H . s a p i e n s 1 1 MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqWGibascqGGUaGlcaaMc8Uaem4CamNaemyyaeMaemiCaaNaemyAaKMaemyzauMaemOBa4Maem4Cam3aa0baaSqaaiabigdaXaqaaiabigdaXaaaaaa@3BE6@ Agene 63 56 47 40 38 48
  Genscan 87 60 63 47 14 39
M . m u s c u l u s 1 2 MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqWGnbqtcqGGUaGlcaaMc8UaemyBa0MaemyDauNaem4CamNaem4yamMaemyDauNaemiBaWMaemyDauNaem4Cam3aa0baaSqaaiabigdaXaqaaiabikdaYaaaaaa@3D97@ Agene 73 88 56 68 28 14
  Genscan 88 82 69 68 14 17
D . r e r i o 2 3 MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqWGebarcqGGUaGlcaaMc8UaemOCaiNaemyzauMaemOCaiNaemyAaKMaem4Ba82aa0baaSqaaiabikdaYaqaaiabiodaZaaaaaa@392E@ Agene 88 89 67 70 13 13
  Genscan 91 87 67 69 12 10
A . g a m b i a e 1 3 MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqWGbbqqcqGGUaGlcaaMc8Uaem4zaCMaemyyaeMaemyBa0MaemOyaiMaemyAaKMaemyyaeMaemyzau2aa0baaSqaaiabigdaXaqaaiabiodaZaaaaaa@3B82@ Agene 81 83 52 63 18 15
D . h a n s e n i i 2 4 MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqWGebarcqGGUaGlcaaMc8UaemiAaGMaemyyaeMaemOBa4Maem4CamNaemyzauMaemOBa4MaemyAaKMaemyAaK2aa0baaSqaaiabikdaYaqaaiabisda0aaaaaa@3D27@ Agene 82 85 64 68 17 19
K . l a c t i s 3 4 MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqWGlbWscqGGUaGlcaaMc8UaemiBaWMaemyyaeMaem4yamMaemiDaqNaemyAaKMaem4Cam3aa0baaSqaaiabiodaZaqaaiabisda0aaaaaa@3A87@ Agene 78 91 69 79 21 11
C . g l a b r a t a 3 4 MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqWGdbWqcqGGUaGlcaaMc8Uaem4zaCMaemiBaWMaemyyaeMaemOyaiMaemOCaiNaemyyaeMaemiDaqNaemyyae2aa0baaSqaaiabiodaZaqaaiabisda0aaaaaa@3D05@ Agene 91 94 82 82 9 9
U . m a y d i s 1 4 MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqWGvbqvcqGGUaGlcaaMc8UaemyBa0MaemyyaeMaemyEaKNaemizaqMaemyAaKMaem4Cam3aa0baaSqaaiabigdaXaqaaiabisda0aaaaaa@3AA5@ Agene 87 94 61 69 14 9