Figure 7
From: A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes
Creation of artificial recombinants with known breakpoints to test jpHMM and Simplot accuracy. (A) The artificial recombinant, constructed from two different clades, has the actual breakpoints at every X-th nucleotide for X = 500, 1000, 1500. Only the construction with X = 1000 is shown here. (B) The phylogenetic tree demonstrates the relations and relative distances between the clades used in the artificial recombinants' construction.