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Figure 9 | BMC Bioinformatics

Figure 9

From: A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes

Figure 9

Comparison of genomic recombinations predicted by our jpHMM tool and reported in the literature. In all reference sequences from CRF02 to CRF08 and CRF10 to CRF14, 70% of the jpHMM's predictions were consistent with the published data. As an example, the figure shows the CRF02 recombinant that consists of subtypes A (shown in red) and G (shown in green). Above is the prediction by jpHMM, below the recombination as reported in the literature (see [42]).

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