Table 1 Summarization of PTP and TPT motifs for various Affymetrix arrays
PTP motifs | TPT motifs | |||||
|---|---|---|---|---|---|---|
array | p-set pairs | probesets | % probesets | transcripts | probesets | % probesets |
hgu133Plus2 | 78504 | 18182 | 33.29% | 11576 | 7285 | 13.34% |
hgu133a | 54762 | 9666 | 43.51% | 9288 | 5289 | 23.81% |
hgu133b | 6218 | 3197 | 14.16% | 3241 | 1526 | 6.76% |
hgu95c | 70156 | 1620 | 12.88% | 3201 | 928 | 7.38% |
hgu95b | 2930 | 1729 | 13.77% | 2256 | 1042 | 8.30% |
hgu95e | 2984 | 1515 | 12.05% | 2113 | 897 | 7.13% |
hgu95d | 1444 | 612 | 4.87% | 1765 | 502 | 3.99% |
hgu95a | 15320 | 3880 | 31.32% | 7309 | 3085 | 24.91% |
moe430_2 | 30552 | 14234 | 31.61% | 4995 | 2439 | 5.42% |
moe430a | 21686 | 9808 | 43.35% | 4142 | 1929 | 8.53% |
moe430b | 4224 | 2647 | 11.76% | 1155 | 517 | 2.30% |
mgu74av2 | 17142 | 2843 | 22.89% | 3221 | 1184 | 9.53% |
mgu74bv2 | 3606 | 2302 | 18.55% | 1175 | 521 | 4.20% |
mgu74cv2 | 1158 | 636 | 5.36% | 888 | 243 | 2.05% |
Rat230_2 | 7134 | 4818 | 15.52% | 2821 | 1011 | 3.26% |
rae230a | 2812 | 2056 | 12.96% | 2404 | 792 | 4.99% |
rae230b | 1792 | 1293 | 8.46% | 581 | 226 | 1.48% |
rgu34b | 908 | 680 | 7.79% | 681 | 181 | 2.07% |
rgu34c | 1382 | 769 | 8.81% | 745 | 243 | 2.78% |
rgu34a | 14818 | 3373 | 38.59% | 2302 | 752 | 8.60% |
rnu34a | 1050 | 600 | 47.51% | 171 | 81 | 6.41% |
rtu34a | 1130 | 442 | 45.47% | 255 | 120 | 12.35% |