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Table 2 Simulation of two palindromic TFBS. Simulation of two palindromic TFBS A and B. The first 2 columns are the complementary positions of the palindromic TFBS. The 3rd and 4th columns are simulation parameters, which specify the probabilities of forming a complementary base pair. The last 2 columns are the p-values of OMiMa's pairwise χ2 tests of position dependency for the simulated data.

From: Optimized mixed Markov models for motif identification

Position pair Complementary Prob. p-value
1st 2nd A B A B
0 11 0.99 0.90 4.88e-88 3.84e-63
1 10 0.95 0.85 6.62e-72 2.66e-56
2 9 0.90 0.75 3.84e-69 2.25e-35
3 8 0.65 0.65 1.44e-19 5.89e-24
4 7 0.50 0.50 2.00e-07 3.05e-03
5 6 0.25 0.25 3.35e-01 1.43e-01