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Table 3 Performance evaluation using simulated palindromic TFBS. Performance comparison of OMiMa (1-L-0) with PWM, 1stMM, and PVLMM (order 1 and depth 1) for predicting two simulated TFBS A and B. The performance was measured as the maximum Mc achieved by each model.

From: Optimized mixed Markov models for motif identification

Motif

PWM

1stMM

PVLMM

OMiMa

A

0.306

0.414

0.807

0.914

B

0.253

0.428

0.647

0.794