Figure 4From: MCALIGN2: Faster, accurate global pairwise alignment of non-coding DNA sequences based on explicit models of indel evolutionAlignments of real non-coding DNA sequences from mouse and rat produced by AVID, CLUSTALW and MCALIGN2. The scale is shown below the alignments, and proportion of matched bases in the alignment is shown on the right. There are three cases (a) alignments of intronic DNA sequence from the Fshb gene, (b) alignments of intronic DNA sequences from the Omd gene and (c) alignments of small pieces of intronic DNA sequences from Omd, in which MCALIGN2 performed quite differently from the others.Back to article page