Table 2 Performance of MCALIGN2(DP), MCALIGN(MC) and PairHMM_KM compared by the estimator of divergenct time corrected by the Jukes-Cantor model
Simulated | Â | Alignment Estimated | |||
|---|---|---|---|---|---|
t | Θ | Alignment Known | PairHMM_KM | MC | DP |
0.05 | 0.225 | 0.0502 (0.0107) | 0.0496 (0.0103) | 0.0499 (0.0104) | 0.0501 (0.0103) |
0.10 | 0.225 | 0.0998 (0.0146) | 0.0987 (0.0152) | 0.0994 (0.0153) | 0.0989 (0.0154) |
0.15 | 0.225 | 0.1493 (0.0208) | 0.1482 (0.0226) | 0.1507 (0.0230) | 0.1487 (0.0208) |
0.20 | 0.225 | 0.2025 (0.0241) | 0.1994 (0.0267) | 0.2053 (0.0263) | 0.2001 (0.0256) |
0.25 | 0.225 | 0.2515 (0.0286) | 0.2440 (0.0348) | 0.2593 (0.0346) | 0.2476 (0.0319) |
0.30 | 0.225 | 0.3003 (0.0311) | 0.2955 (0.0419) | 0.3162 (0.0525) | 0.2981 (0.0349) |
0.15 | 0.10 | 0.1519 (0.0198) | 0.1503 (0.0189) | 0.1502 (0.0189) | 0.1500 (0.0188) |
0.15 | 0.30 | 0.1515 (0.0202) | 0.1507 (0.0226) | 0.1566 (0.0234) | 0.1523 (0.0218) |
0.15 | 0.40 | 0.1512 (0.0194) | 0.1480 (0.0220) | 0.1645 (0.0263) | 0.1516 (0.0213) |