Simulated | Proportion of matched bases | ||||
---|---|---|---|---|---|
t | Θ | AVID | MCALIGN2(JC) | MCALIGN2(K2P) | MCALIGN2(GTR) |
0.05 | 0.225 | 0.991 (0.0085) | 0.993 (0.0057) | 0.993 (0.0057) | 0.993 (0.0057) |
0.10 | 0.225 | 0.973 (0.0141) | 0.978 (0.0127) | 0.979 (0.0127) | 0.979 (0.0127) |
0.15 | 0.225 | 0.946 (0.0283) | 0.954 (0.0212) | 0.956 (0.0184) | 0.958 (0.0184) |
0.20 | 0.225 | 0.904 (0.0325) | 0.916 (0.0283) | 0.920 (0.0269) | 0.922 (0.0269) |
0.25 | 0.225 | 0.852 (0.0452) | 0.867 (0.0438) | 0.873 (0.0410) | 0.876 (0.0396) |
0.30 | 0.225 | 0.795 (0.0566) | 0.811 (0.0495) | 0.824 (0.0481) | 0.831 (0.0481) |
0.15 | 0.10 | 0.980 (0.0141) | 0.982 (0.0113) | 0.982 (0.0113) | 0.983 (0.0113) |
0.15 | 0.30 | 0.913 (0.0283) | 0.935 (0.0226) | 0.936 (0.0212) | 0.941 (0.0212) |
0.15 | 0.40 | 0.876 (0.0354) | 0.900 (0.0311) | 0.905 (0.0297) | 0.916 (0.0283) |