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Table 2 List of top ten genes specific to lung and to fetal lung. Probesets and two entropy scores estimated by ROKU and Schug's method are shown. *Probesets indicate those listed to be "specific to lung" are also listed to be "specific to fetal lung" and vice versa. Note that Schug's method has strong redundancy when similar tissues are selected independently and therefore cannot detect probesets specific only to the objective tissue.

From: ROKU: a novel method for identification of tissue-specific genes

ROKU

Schug's method

Probeset ID

H(x')

Probeset ID

Q(x)

Specific to Lung

   

205207_at

2.483

215454_x_at *

1.223

215677_s_at

4.006

218835_at

1.310

206432_at

4.020

214199_at

1.512

218627_at

4.066

211735_x_at *

1.941

204622_x_at

4.255

205982_x_at *

1.959

205624_at

4.290

214387_x_at *

1.994

216782_at

4.339

37004_at *

2.311

206026_s_at

4.361

209810_at *

2.521

219361_s_at

4.378

217046_s_at

2.820

205027_s_at

4.414

205819_at

3.498

Specific to Fetal lung

   

204545_at

2.779

205982_x_at *

2.591

221418_s_at

2.879

211735_x_at *

2.662

206315_at

3.252

214387_x_at *

2.863

211300_s_at

3.369

37004_at *

3.151

213417_at

3.399

209810_at *

3.258

206159_at

3.791

38691_s_at

3.716

208474_at

3.883

203417_at

4.307

220707_s_at

3.936

211237_s_at

4.480

206646_at

4.039

215454_x_at *

4.494

221284_s_at

4.044

204468_s_at

4.637