TY - JOUR AU - Mathé, C. AU - Sagot, M. F. AU - Schiex, T. AU - Rouzé, P. PY - 2002 DA - 2002// TI - Current methods of gene prediction, their strengths and weaknesses. JO - Nucleic Acids Res VL - 30 UR - https://doi.org/10.1093/nar/gkf543 DO - 10.1093/nar/gkf543 ID - Mathé2002 ER - TY - JOUR AU - Brent, M. R. AU - Guigó, R. PY - 2004 DA - 2004// TI - Recent advances in gene structure prediction. JO - Curr Opin Struct Biol VL - 14 UR - https://doi.org/10.1016/j.sbi.2004.05.007 DO - 10.1016/j.sbi.2004.05.007 ID - Brent2004 ER - TY - JOUR AU - Staley, J. P. AU - Guthrie, C. PY - 1998 DA - 1998// TI - Mechanical devices in the spliceosome: Clocks, motors, springs and things. JO - Cell VL - 92 UR - https://doi.org/10.1016/S0092-8674(00)80925-3 DO - 10.1016/S0092-8674(00)80925-3 ID - Staley1998 ER - TY - JOUR AU - Buratti, E. AU - Baralle, F. E. PY - 2004 DA - 2004// TI - Influence of RNA secondary structure on the pre-mRNA splicing process. JO - Mol Cell Biol VL - 24 UR - https://doi.org/10.1128/MCB.24.24.10505-10514.2004 DO - 10.1128/MCB.24.24.10505-10514.2004 ID - Buratti2004 ER - TY - JOUR AU - Patterson, D. J. AU - Yasuhara, K. AU - Ruzzo, W. L. PY - 2002 DA - 2002// TI - Pre-mRNA secondary structure prediction aids splice site prediction. JO - Pac Symp Biocomput VL - 7 ID - Patterson2002 ER - TY - JOUR AU - Marashi, S. A. AU - Goodarzi, H. AU - Sadeghi, M. AU - Eslahchi, C. AU - Pezeshk, H. PY - 2006 DA - 2006// TI - Importance of RNA secondary structure information for yeast donor and acceptor splice site predictions by neural networks. JO - Comput Biol Chem VL - 30 UR - https://doi.org/10.1016/j.compbiolchem.2005.10.009 DO - 10.1016/j.compbiolchem.2005.10.009 ID - Marashi2006 ER - TY - JOUR AU - Chen, S. AU - Anderson, K. AU - Moore, M. J. PY - 2000 DA - 2000// TI - Evidence for a linear search in bimolecular 3' splice site AG selection. JO - Proc Natl Acad Sci USA VL - 97 UR - https://doi.org/10.1073/pnas.97.2.593 DO - 10.1073/pnas.97.2.593 ID - Chen2000 ER - TY - JOUR AU - Rivas, E. AU - Eddy, S. R. PY - 2000 DA - 2000// TI - Secondary structure alone is generally not statistically significant for the detection of noncoding RNAs. JO - Bioinformatics VL - 16 UR - https://doi.org/10.1093/bioinformatics/16.7.583 DO - 10.1093/bioinformatics/16.7.583 ID - Rivas2000 ER - TY - JOUR AU - Hofacker, I. L. AU - Fontana, W. AU - Stadler, P. F. AU - Bonhoeffer, S. AU - Tacker, M. AU - Schuster, P. PY - 1994 DA - 1994// TI - Fast folding and comparison of RNA secondary structures. JO - Monatshefte Für Chemie VL - 125 UR - https://doi.org/10.1007/BF00818163 DO - 10.1007/BF00818163 ID - Hofacker1994 ER - TY - JOUR AU - Zuker, M. PY - 2003 DA - 2003// TI - Mfold web server for nucleic acid folding and hybridization prediction. JO - Nucleic Acids Res VL - 31 UR - https://doi.org/10.1093/nar/gkg595 DO - 10.1093/nar/gkg595 ID - Zuker2003 ER - TY - JOUR AU - Najafabadi, H. S. AU - Goodarzi, H. AU - Torabi, N. AU - Banihosseini, S. S. PY - 2006 DA - 2006// TI - Applying a neural network to predict the thermodynamic parameters for an expanded nearest-neighbor model. JO - J Theor Biol VL - 283 UR - https://doi.org/10.1016/j.jtbi.2005.06.014 DO - 10.1016/j.jtbi.2005.06.014 ID - Najafabadi2006 ER - TY - JOUR AU - Gardner, P. P. AU - Giegerich, R. PY - 2004 DA - 2004// TI - A comprehensive comparison of comparative RNA structure prediction approaches. JO - BMC Bioinformatics VL - 5 UR - https://doi.org/10.1186/1471-2105-5-140 DO - 10.1186/1471-2105-5-140 ID - Gardner2004 ER - TY - JOUR AU - Zuker, M. AU - Stiegler, P. PY - 1981 DA - 1981// TI - Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information. JO - Nucleic Acids Res VL - 9 UR - https://doi.org/10.1093/nar/9.1.133 DO - 10.1093/nar/9.1.133 ID - Zuker1981 ER - TY - JOUR AU - Korning, P. G. AU - Hebsgaard, S. M. AU - Rouzé, P. AU - Brunak, S. PY - 1996 DA - 1996// TI - Cleaning the GenBank Arabidopsis thaliana data set. JO - Nucleic Acids Res VL - 24 UR - https://doi.org/10.1093/nar/24.2.316 DO - 10.1093/nar/24.2.316 ID - Korning1996 ER - TY - JOUR AU - Pertea, M. AU - Lin, X. AU - Salzberg, S. L. PY - 2001 DA - 2001// TI - Genesplicer: a new computational method for splice site prediction. JO - Nucleic Acids Res VL - 29 UR - https://doi.org/10.1093/nar/29.5.1185 DO - 10.1093/nar/29.5.1185 ID - Pertea2001 ER - TY - JOUR AU - Burset, M. AU - Guigó, R. PY - 1996 DA - 1996// TI - Evaluation of gene structure prediction programs. JO - Genomics VL - 34 UR - https://doi.org/10.1006/geno.1996.0298 DO - 10.1006/geno.1996.0298 ID - Burset1996 ER - TY - JOUR AU - Rogic, S. AU - Mackworth, A. K. AU - Ouellette, B. F. F. PY - 2001 DA - 2001// TI - Evaluation of gene-finding programs on mammalian sequences. JO - Genome Res VL - 11 UR - https://doi.org/10.1101/gr.147901 DO - 10.1101/gr.147901 ID - Rogic2001 ER - TY - JOUR AU - Zhang, M. Q. AU - Marr, T. G. PY - 1993 DA - 1993// TI - A weight array method for splicing signal analysis. JO - Comput Appl Biosci VL - 9 ID - Zhang1993 ER - TY - JOUR AU - Staden, R. PY - 1984 DA - 1984// TI - Computer methods to locate signals in nucleic acid sequences. JO - Nucleic Acids Res VL - 12 UR - https://doi.org/10.1093/nar/12.1Part2.505 DO - 10.1093/nar/12.1Part2.505 ID - Staden1984 ER -