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Table 1 Secondary structure prediction accuracy of PROTEUS versus that obtained with 7 different protein prediction servers using an identical set of 10 recently solved non-membrane proteins. Note that the PHD server was not included since it was used in the 125 protein test shown in Figure 6.

From: Improving the accuracy of protein secondary structure prediction using structural alignment

Method Proteus HNN [56] JPRED [57] PSIPred [58] SSPro4 [59] Porter [60] Sopma [61] Prof [62]
Q3 89.9 58.1 74.2 75.9 75.7 75.6 62.3 74.2
SOV 90.3 58.8 77.9 76.1 74.9 75.6 62.3 77.8