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Table 1 Secondary structure prediction accuracy of PROTEUS versus that obtained with 7 different protein prediction servers using an identical set of 10 recently solved non-membrane proteins. Note that the PHD server was not included since it was used in the 125 protein test shown in Figure 6.

From: Improving the accuracy of protein secondary structure prediction using structural alignment

Method

Proteus

HNN [56]

JPRED [57]

PSIPred [58]

SSPro4 [59]

Porter [60]

Sopma [61]

Prof [62]

Q3

89.9

58.1

74.2

75.9

75.7

75.6

62.3

74.2

SOV

90.3

58.8

77.9

76.1

74.9

75.6

62.3

77.8