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Table 2 Consensus sequences (4ā€“8 nt) in upstream regions of WSSV genes identified with MEME. Only the best 3 hits of MEME are shown. In case of all WSSV genes, the number of sequences in which the consensus sequence occurred is indicated.

From: In silico identification of putative promoter motifs of White Spot Syndrome Virus

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All WSSV genes (0 or 1 occurrence per individual sequence)

Early WSSV genes (1 occurrence per individual sequence)

Late WSSV genes (1 occurrence per individual sequence)

100 nt upstream

gtataaa a (TATA box) (61 seqs)

tgtttttt (T-rich) (65 seqs)

gaggaaga (61 seqs)

gtataaa a (TATA box)

ttttttca (T-rich)

caacatca

gtataaa a (TATA box)

tttgtgta

aacc

200 nt upstream

gtataaa a (TATA box) (112 seqs)

ttgttttt (T-rich) (65 seqs)

tcctcctc (61 seqs)

agaagagg

tatttttt (T-rich)

agaaat

gaggaaga

tcttttat (T-rich)

aaaaatat (A-rich)