Skip to main content

Table 8 Most frequently selected genes for the GCM dataset.

From: Differential prioritization between relevance and redundancy in correlation-based feature selection techniques for multiclass gene expression data

Rank Annotation Remarks Group
1 Human DNA sequence from clone 753P9 on chromosome Xq25-26.1. Contains the gene coding for Aminopeptidase P (EC 3.4.11.9, XAA-Pro/X-Pro/Proline/Aminoacylproline Aminopeptidase) and a novel gene. Ranked #31 in the OVA marker list for the lymphoma class in [2] M
2 Antigen, Prostate Specific, Alt. Splice Form 2 Ranked #8 in the OVA marker list for the prostate cancer class in [2] M
3 Galectin-4 Ranked #1 in the OVA marker list for the colorectal cancer class in [2] M
4 Homo sapiens mRNA for APCL protein, complete cds Under-expressed in ovarian cancer, and thus a potential tumor suppressor gene in ovarian cancer [50] 1
5 Ins(1,3,4,5)P4-binding protein Ranked #24 in the OVA marker list for the leukemia class in [2] M
6 CARCINOEMBRYONIC ANTIGEN PRECURSOR Ranked #4 in the OVA marker list for the colorectal cancer class in [2] M
7 PMEL 17 PROTEIN PRECURSOR Ranked #6 in the OVA marker list for the melanoma class in [2] M
8 KLK1 Kallikrein 1 (renal/pancreas/salivary) Ranked #18 in the OVA marker list for the prostate cancer class in [2] M
9 EST: zt56g08.s1 Soares ovary tumor NbHOT Homo sapiens cDNA clone 726398 3', mRNA sequence. (from Genbank) Ranked #5 in the OVA marker list for the mesothelioma class in [2] M
10 EST: zr71g09.s1 Soares NhHMPu S1 Homo sapiens cDNA clone 668896 3', mRNA sequence. (from Genbank) Ranked #5 in the OVA marker list for the CNS tumor class in [2] M
11 Ribosomal protein S19 Ranked #1 in the OVA marker list for the lymphoma class in [2] M
12 PULMONARY SURFACTANT-ASSOCIATED PROTEIN B PRECURSOR Ranked #3 in the OVA marker list for the lung cancer class in [2] M
13 Mammaglobin 2 A marker for breast cancer [51] 1
14 MRJ gene for a member of the DNAJ protein family Associated with a tumor-transforming gene protein [52] 2
15 LPAP gene Its product mediates proliferative and/or morphologic effects on ovarian cancer cells [53] 1
16 EST: zq49c07.s1 Stratagene hNT neuron (#937233) Homo sapiens cDNA clone 633036 3', mRNA sequence. (from Genbank) Identified as a marker of CNS tumor in [54] 1
17 Eyes absent homolog (Eab1) mRNA Up-regulated in epithelial ovarian cancer [55] 1
18 Pulmonary surfactant-associated protein SP-A (SFTP1) gene Ranked #1 in the OVA marker list for the lung cancer class in [2] M
19 EST: ab17g09.s1 Stratagene lung (#937210) Homo sapiens cDNA clone 841120 3' similar to contains LTR7.b2 LTR7 repetitive element ;, mRNA sequence. (from Genbank) Ranked #10 in the OVA marker list for the lung cancer class in [2] M
20 TUMOR-ASSOCIATED ANTIGEN CO-029 Ranked #5 in the OVA marker list for the colorectal cancer class in [2] M
21 MLANA Differentiation antigen melan-A Ranked #4 in the OVA marker list for the melanoma class in [2] M
22 LI-cadherin Ranked #3 in the OVA marker list for the colorectal cancer class in [2] M
23 Antigen, Prostate Specific, Alt. Splice Form 3 Ranked #39 in the OVA marker list for the prostate cancer class in [2] M
24 GPX2 Glutathione peroxidase 2, gastrointestinal Found to play a role in colon cancer resistance [56] 1
25 Phosphodiesterase 9A Ranked #28 in the OVA marker list for the prostate cancer class in [2] M
  1. Top 25 genes ranked from the most frequently selected genes for the GCM dataset. Group M: identified as a marker or repressor of a specific tumor type in originating study. Group 1: identified as a marker or repressor of a specific tumor type in other studies. Group 2: known to either promote or inhibit tumor in general. Group 3: tissue-specific genes. Group 4: unknown sequences and genes with either still-unidentified function or general housekeeping roles.