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Table 2

From: Identification of putative domain linkers by a neural network – application to a large sequence database

 

Putative domain linkersa

Low-complexity regionsb

 

Uniquely linker regions

Overlapped with low-complexity regions

Overlapped with putative domain linkers

Uniquely Low complexity

Correct matches of both ends (class 1)

236 (4.3%)

94 (3.6%)

97 (3.8%)

101 (1.7%)

Correct matches of either end (class 2)

1241 (22.6%)

665 (25.2%)

706 (27.6%)

1358 (22.7%)

Unknown locations (class 3)

3469 (63.2%)

1684 (63.7%)

1544 (60.3%)

3851 (64.4%)

Overlaps (class 4)

544 (9.9%)

200 (7.6%)

214 (8.4%)

668 (11.2%)

Total

5490

2643

2561

5978

  1. Overlaps between putative domain linkers and low-complexity regions. a The putative domain linkers were assigned by the neural network with a cutoff of 0.95. b The low-complexity regions were assigned by the SEG program with a trigger window of 45 residues, a trigger complexity of 2.9, and an extension complexity of 3.2.