Novel knowledge-based mean force potential at the profile level

BMC Bioinformatics

Table 1 Comparative results of potentials at our structure models

Potentials	CP	Success rates	Z-scores	Potentials	CP	Success rates	Z-scores
Distance	0.86	400/431	2.86	Dihedral	0.81	256/431	1.92
Distance_profile	0.91	422/431	3.26	Dihedral_profile	0.82	270/431	2.08
Contact	0.81	221/431	1.84	Surface	0.85	309/431	2.33
Contact_profile	0.83	232/431	1.96	Surface_profile	0.90	335/431	2.78

The distance, contact, dihedral and surface refer to the four kinds of potentials at the residue level. The potentials with _profile suffix indicate the corresponding potentials at the profile level. In the success rates columns, the first number is the number of native structures ranked number one; the second number is the total number of proteins in the decoy set.

ISSN: 1471-2105