Table 2 Alterations in change calls following adjustment for cell compartment size. Total probesets called upregulated (Up), downregulated (Down), or non-changing (NC) before ("Pre-adj") and after ("Post-adj") adjusting for estimated changes in cell compartment sizes. The percentages of probesets whose post-adjustment change calls were the same as or different than their pre-adjustment change calls are shown.
From: Computational expression deconvolution in a complex mammalian organ
Mammary glands | Pre-adj calls | Post-adj calls | Percentage of changed calls (%) |
|---|---|---|---|
d18 pregnant vs. 10 wk nulliparous | Up: 802 | Up: 640 Down: 34 NC: 128 | 79.8 4.2 16.0 |
| Â | Down: 1109 | Up: 33 Down: 719 NC: 357 | 3.0 64.8 32.2 |
| Â | NC: 10577 | Up: 547 Down: 1085 NC: 8945 | 5.2 10.3 84.5 |
d4 vs. d0 following Ras activation | Up: 1545 | Up: 1045 Down: 151 NC: 349 | 67.6 9.8 22.6 |
| Â | Down: 792 | Up: 85 Down: 330 NC: 377 | 10.7 41.7 47.6 |
| Â | NC: 10151 | Up: 970 Down: 947 NC: 8234 | 9.6 9.3 81.1 |