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Table 2 Identification of TFBSs involved in tissue specific gene expression

From: Genome-wide prediction of transcriptional regulatory elements of human promoters using gene expression and promoter analysis data

TFBS_ID

TFBS

Tissue

Z score

p_value

q_value

V$NRSF_01

NRSF

brain

6.12

9.54E-10

1.62E-07

V$SRF_Q6

SRF

heart

4.63

3.68E-06

0.0007

V$SRF_C

SRF

heart

4.09

4.33E-05

0.00411

V$SRF_01

SRF

heart

3.74

0.0002

0.01151

V$MEF2_01

MEF-2

heart

3.47

0.0005

0.02441

V$HNF1_C

HNF-1

kidney

3.93

8.54E-05

0.01623

V$HNF1_01

HNF-1

liver

7.89

2.89E-15

3.28E-13

V$GRE_C

GR

liver

4.85

1.22E-06

6.91E-05

V$HNF4_01

HNF-4

liver

4.39

1.15E-05

0.00043

V$HNF1_C

HNF-1

liver

3.72

2.00E-04

0.00559

V$COUP_01

COUP-TF, HNF-4

liver

3.5

5.00E-04

0.01059

V$AP1_C

AP-1

lung

4.13

3.64E-05

0.00682

V$NFKAPPAB65_01

NF-κB

lung

3.66

0.0002

0.0233

V$AP1_Q6

AP-1

prostate

3.67

0.0002

0.02802

V$MEF2_02

MEF-2

skeletal muscle

4.53

5.96E-06

0.00099

V$NRSF_01

NRSF

spinal cord

3.87

0.0001

0.02026

V$IRF1_01

IRF-1

spleen

3.99

6.70E-05

0.00936

V$NFKAPPAB65_01

NF-KB

spleen

3.81

0.0001

0.00985

V$NFKAPPAB_01

NF-κB

spleen

3.55

0.0004

0.01815

V$E2F_02

E2F

thymus

4.65

3.29E-06

0.00043

V$CETS1P54_02

c-Ets-1

thymus

4.18

2.93E-05

0.00126

V$IRF1_01

IRF1

thymus

4.2

2.65E-05

0.00126

V$E2F_01

E2F

thymus

4.09

4.39E-05

0.00142

V$CETS1P54_01

c-Ets-1

thymus

4.01

5.98E-05

0.00155

V$E2F_Q6

E2F

thymus

3.74

0.0002

0.00396

V$NRF2_01

NRF-2

thymus

3.58

0.0003

0.00564

V$OCT1_07

Oct-1

thymus

3.17

0.0015

0.01993

V$OCT1_05

Oct-1

thymus

3.17

0.0015

0.01993

V$NFY_Q6

NF-Y

thymus

2.85

0.0043

0.04663