Table 3 Accuracy of the prediction of TFBSs: comparison with known TFBSs of genes.
| Â | Â | Matrix | Â | Â | Factor | Â | ||
|---|---|---|---|---|---|---|---|---|
Platform | U95 | U133 | U95 | U133 | ||||
q_value | count | percent | count | percent | count | percent | count | percent |
0.001 | 378 | 13.4 | 390 | 13.2 | 185 | 6.6 | 218 | 7.4 |
0.005 | 610 | 21.6 | 659 | 22.3 | 311 | 11.1 | 347 | 11.8 |
0.01 | 773 | 27.4 | 800 | 27.1 | 389 | 13.9 | 436 | 14.9 |
0.05 | 1216 | 43.1 | 1295 | 43.9 | 722 | 25.8 | 787 | 26.8 |
0.1 | 1524 | 54.1 | 1650 | 56.0 | 1003 | 35.9 | 999 | 34 |
1 | 2819 | 100 | 2949 | 100 | 2797 | 100 | 2935 | 100 |