PROMPT: a protein mapping and comparison tool

BMC Bioinformatics

Table 1 Overview of possible data inputs. Shown are the types of input that can be processed by PROMPT. The Generic XML format can contain any numeric or nominal properties provided by the user.

Format:	Folder with multiple files, each containing one element	Individual file with one or more elements	List of Identifiers	Elements may contain sequences	Elements may contain annotation attributes
FASTA		x		x
GenBank		x	x	x
EMBL		x		x
Swiss-Prot	x	x	x	x	x
UniProt XML	x	x	x	x	x
Generic XML		x		x	x
Tab-delimited		x		x	x
WEKA		x			x

ISSN: 1471-2105