Figure 3
From: Cluster analysis of protein array results via similarity of Gene Ontology annotation
Silhouette plots of PAM clustering results for Schreiber data set. Silhouette plots of PAM clustering results for 37 rapamycin-inhibitor binding proteins for GO (A) BP, (B) MF and (C) CC. Proteins assigned either the unknown term from each GO aspect (GO:0000004 biological process unknown, GO:0005554 molecular function unknown and GO:0008372 cellular component unknown) or using the evidence code Inferred from Electronic Annotation were not included in the clustering. Therefore 30 proteins were clustered in BP, 31 in MF and 32 in CC. The silhouette width for the entire set (average silhouette width, siD) is found at the top of each figure whereas the silhouette width for each cluster (siC) is found on the right-hand side of the figure with the cluster number (left of the colon) and number of proteins in each cluster (right of the colon). Each cluster is labelled with the GO annotation of the medoid, except BP cluster 4 as the text did not fit on the figure. Each protein is represented by a bar and the width of the each bar represents the silhouette width for each protein (si). * GO annotation for BP cluster 4 is GO:0046856 phosphoinositide dephosphorylation, GO:0048017 inositol lipid-mediated signaling and GO:0030476 spore wall assembly (sensu Fungi).