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Table 2 Results from different programs for difficult structure pairs

From: Tools for integrated sequence-structure analysis with UCSF Chimera

pair PDB ID PDB ID Chimera TOPOFIT CE CE/MA
1 3chy 2fox 88/2.2 19/0.7 108/3.6 93/2.6
2 2aza A 1paz 79/2.0 72/1.7 84/2.9 81/2.4
3 1cew I 1mol A 73/1.9 73/1.6 81/2.3 78/1.9
4 1cid 2rhe 90/2.0 69/1.5 97/2.9 88/1.9
5 1crl 1ede 184/2.5 143/1.9 219/3.8 183/2.3
6 2sim 1nsb A 257/2.6 207/2.0 275/3.0 266/2.5
7 1ten 3hhr B 82/1.3 81/1.4 87/1.9 85/1.6
8 1tie 4fgf 73/2.2 88/1.6 116/2.9 105/2.1
9 2snv 5ptp 118/2.3 83/1.8 130/3.1 118/2.4
10 1gp1 A 2trx A 89/1.8 96/1.6 64/5.2 54/2.7
  1. Results are of the form N/RMSD, where N is the number of residue pairs matched and RMSD is the corresponding alpha-carbon root-mean-square deviation. Chimera: results from using MatchMaker and then Match -> Align with default settings, as reported under MM-default in Table 1. TOPOFIT [31] results were obtained using the web server [35]. CE [26] results were obtained using the web server [34] with default settings. CE/MA: equivalences obtained by using Match -> Align with cutoff 5.0 angstroms on the superpositions from CE.