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Table 4 The performance of AL-BP-MD-ME-MS on a dataset of shuffled margin sequences a).

From: EMD: an ensemble algorithm for discovering regulatory motifs in DNA sequences

 

nPC

nSn

nSp

Margin size (nt)

100

200

400

100

200

400

100

200

400

Original set b)

0.288

0.254

0.197

0.328

0.292

0.234

0.416

0.360

0.270

Shuffled set c)

0.317

0.255

0.187

0.340

0.275

0.201

0.481

0.375

0.266

  1. a) To the both sides of known sites in the ECRDB61B data set, artificially shuffled sequences with the size of 100, 200, and 400 nt are attached. The statistics of the di-mer nucleotide frequency used to generate the shuffled margin sequences are taken from intergenic regions of the E. coli genome.
  2. b) The performance on the original ECRDB61B-100, 200, 400 set.
  3. c) The performance on the data set with shuffled margin sequences.
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BMC Bioinformatics

ISSN: 1471-2105

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