TY - BOOK AU - Bourne, P. E. AU - Weissig, H. PY - 2003 DA - 2003// TI - Structural Bioinformatics PB - Wiley-Liss Inc CY - Hoboken, NJ UR - https://doi.org/10.1002/0471721204 DO - 10.1002/0471721204 ID - Bourne2003 ER - TY - JOUR AU - Holm, L. AU - Sander, C. PY - 1993 DA - 1993// TI - Protein structure comparison by alignment of distance matrices JO - J Mol Biol VL - 233 UR - https://doi.org/10.1006/jmbi.1993.1489 DO - 10.1006/jmbi.1993.1489 ID - Holm1993 ER - TY - JOUR AU - Boutonnet, N. S. AU - Rooman, M. J. AU - Ochagavia, M. E. AU - Richelle, J. AU - Wodak, S. J. PY - 1995 DA - 1995// TI - Optimal protein structure alignments by multiple linkage clustering: application to distantly related proteins JO - Protein Engineering VL - 8 UR - https://doi.org/10.1093/protein/8.7.647 DO - 10.1093/protein/8.7.647 ID - Boutonnet1995 ER - TY - JOUR AU - Madej, T. AU - Gibrat, J. F. AU - Bryant, S. H. PY - 1995 DA - 1995// TI - Threading a database of protein cores JO - Proteins VL - 23 UR - https://doi.org/10.1002/prot.340230309 DO - 10.1002/prot.340230309 ID - Madej1995 ER - TY - JOUR AU - Shindyalov, I. N. AU - Bourne, P. E. PY - 1998 DA - 1998// TI - Protein structure by incremental combinatorial extension (CE) of the optimal path JO - Protein Engineering VL - 11 UR - https://doi.org/10.1093/protein/11.9.739 DO - 10.1093/protein/11.9.739 ID - Shindyalov1998 ER - TY - JOUR AU - Eidhammer, I. AU - Jonassen, I. AU - Grindhaug, S. H. AU - Gilbert, D. AU - Ratnayake, M. PY - 2001 DA - 2001// TI - A constraint based structure description language for biosequences JO - Constraints VL - 6 UR - https://doi.org/10.1023/A:1011481521835 DO - 10.1023/A:1011481521835 ID - Eidhammer2001 ER - TY - JOUR AU - Kolodny, R. AU - Koehl, P. AU - Levitt, C. PY - 2005 DA - 2005// TI - Comprehensive Evaluation of Protein Structure Alignment Methods: Scoring Geometric Measures JO - J Mol Biol VL - 346 UR - https://doi.org/10.1016/j.jmb.2004.12.032 DO - 10.1016/j.jmb.2004.12.032 ID - Kolodny2005 ER - TY - JOUR AU - Shatsky, M. AU - Nussinov, R. AU - Wolfson, H. J. PY - 2002 DA - 2002// TI - Flexible protein alignment and hinge detection JO - Proteins VL - 48 UR - https://doi.org/10.1002/prot.10100 DO - 10.1002/prot.10100 ID - Shatsky2002 ER - TY - JOUR AU - Ye, Y. AU - Godzik, A. PY - 2003 DA - 2003// TI - Flexible structure alignment by chaining aligned fragment pairs allowing twists JO - Bioinformatics VL - 19 ID - Ye2003 ER - TY - JOUR AU - Rogen, P. AU - Fain, H. PY - 2003 DA - 2003// TI - Automatic classification of protein structure by using Gauss integrals JO - Proc Natl Acad Sci USA VL - 100 UR - https://doi.org/10.1073/pnas.2636460100 DO - 10.1073/pnas.2636460100 ID - Rogen2003 ER - TY - JOUR AU - Rogen, P. AU - Bohr, H. PY - 2003 DA - 2003// TI - A new family of global protein shape descriptors JO - Math Biosci VL - 182 UR - https://doi.org/10.1016/S0025-5564(02)00216-X DO - 10.1016/S0025-5564(02)00216-X ID - Rogen2003 ER - TY - JOUR AU - Erdmann, M. PY - 2005 DA - 2005// TI - Protein similarity from knot theory: Geometric convolution and Line Weaving JO - J Comp Biol VL - 12 UR - https://doi.org/10.1089/cmb.2005.12.609 DO - 10.1089/cmb.2005.12.609 ID - Erdmann2005 ER - TY - JOUR AU - Rackovsky, S. AU - Scheraga, H. A. PY - 1984 DA - 1984// TI - Differential Geometry and Protein Folding JO - Acc Chem Res VL - 17 UR - https://doi.org/10.1021/ar00102a002 DO - 10.1021/ar00102a002 ID - Rackovsky1984 ER - TY - JOUR AU - Montalvão, R. W. AU - Smith, R. E. AU - Lovell, S. C. AU - Blundell, T. L. PY - 2005 DA - 2005// TI - CHORAL: a differential geometry approach to predicition of the cores of protein structures JO - Bioinformatics VL - 21 UR - https://doi.org/10.1093/bioinformatics/bti595 DO - 10.1093/bioinformatics/bti595 ID - Montalvão2005 ER - TY - CHAP AU - Fischer, D. AU - Elofsson, A. AU - Rice, D. AU - Eisenberg, D. PY - 1996 DA - 1996// TI - Assessing the performance of fold recognition methods by means of a comprehensive benchmark BT - Pacific Symposium on Biocomputing ID - Fischer1996 ER - TY - JOUR AU - Jia, Y. AU - Dewey, T. G. PY - 2005 DA - 2005// TI - A random polymer model of the statistical significance of structure alignment JO - J Comp Biol VL - 12 UR - https://doi.org/10.1089/cmb.2005.12.298 DO - 10.1089/cmb.2005.12.298 ID - Jia2005 ER - TY - JOUR AU - Dewey, T. G. PY - 1993 DA - 1993// TI - Protein Structure and polymer collapse JO - J Chem Phys VL - 98 UR - https://doi.org/10.1063/1.464205 DO - 10.1063/1.464205 ID - Dewey1993 ER - TY - JOUR AU - Scheeff, E. AU - Bourne, P. E. PY - 2006 DA - 2006// TI - Structural evolution of the protein kinase-like superfamily JO - PLoS Computational Biology VL - 1 UR - https://doi.org/10.1371/journal.pcbi.0010049 DO - 10.1371/journal.pcbi.0010049 ID - Scheeff2006 ER - TY - JOUR AU - Godzik, A. PY - 1996 DA - 1996// TI - The structural alignment of two proteins: Is there a unique answer? JO - Protein Science VL - 5 UR - https://doi.org/10.1002/pro.5560050711 DO - 10.1002/pro.5560050711 ID - Godzik1996 ER - TY - JOUR AU - Taylor, S. S. AU - Radzio-Andzelm, E. PY - 1994 DA - 1994// TI - Three protein kinase structures define a common motif JO - Structure VL - 2 UR - https://doi.org/10.1016/S0969-2126(00)00036-8 DO - 10.1016/S0969-2126(00)00036-8 ID - Taylor1994 ER - TY - JOUR AU - Klenin, K. AU - Langowski, J. PY - 2000 DA - 2000// TI - Computation of writhe in modeling of supercoiled DNA JO - Biopolymers VL - 54 UR - https://doi.org/3.0.CO;2-Y DO - 3.0.CO;2-Y ID - Klenin2000 ER -