Table 3 TextPresso-predicted and manually curated Brucella genetic interactions. One match means one highlighted sentence containing at least 2 genes and at least one word under "association" or "regulation" category. Each match represents for one predicted genetic interaction. The results are shown by manually verified vs. TextPresso-predicted interactions. The number of verified vs. predicted interactions varies depending on the numbers (#) of matches and papers to use as the cutoffs and whether or not to use full text contents besides paper abstracts.
From: BBP: Brucella genome annotation with literature mining and curation
Abstract | Full text (containing abstract) | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
# of papers | # of matches | # of papers | # of matches | |||||||||||
| Â | 1 | 2 | 3 | 4 | 5 | 10 | Â | 1 | 2 | 3 | 4 | 5 | 10 | 20 |
1 | 17/38 | 6/10 | 1/1 | 1/1 | 1/1 | 0/0 | 1 | 58/1330 | 50/213 | 42/105 | 34/81 | 31/63 | 16/26 | 6/7 |
2 | 3/5 | 3/5 | 1/1 | 1/1 | 1/1 | 0/0 | 2 | 46/172 | 46/172 | 41/94 | 34/73 | 31/55 | 16/26 | 6/7 |
3 | 1/1 | 1/1 | 1/1 | 1/1 | 1/1 | 0/0 | 3 | 33/71 | 33/71 | 33/71 | 30/60 | 28/45 | 15/24 | 6/7 |
4 | 1/1 | 1/1 | 1/1 | 1/1 | 1/1 | 0/0 | 4 | 28/50 | 28/50 | 28/50 | 28/50 | 27/40 | 15/23 | 6/7 |
8 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 8 | 8/10 | 8/10 | 8/10 | 8/10 | 8/10 | 8/10 | 6/7 |