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Table 2 The alignment quality is measured by the average MaxSub score for protein pairs from the same SCOP superfamily (and different family) and fold (and different superfamily).

From: Improved alignment quality by combining evolutionary information, predicted secondary structure and self-organizing maps

Method

Average MaxSub

 

Superfamily

Fold

Prob_score

0.20

0.063

Prob_score_SS

0.22

0.088

Prob_score_SOM

0.20

0.070

Prob_score_SS_SOM

0.22

0.093

ProfNet

0.20

0.072

ProfNet_SS

0.22

0.091

ProfNet_SOM

0.21

0.078

ProfNet_SS_SOM

0.22

0.107

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BMC Bioinformatics

ISSN: 1471-2105

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