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Table 1 Summary of input attributes for the different probability schemes.

From: A direct comparison of protein interaction confidence assignment schemes

Prob. Scheme

Experiment Type

Number of Experimental Observations

Protein-DNA binding

Gene/Protein Expression

Interaction Clustering

SL*

GO*

DDI*

Gene Fusion/Co-occur/Nbrhd*

BADER_LOW

X

X

  

X

    

BADER_HIGH

X

X

 

X

X

X

X

  

DEANE

 

X

 

X

     

DENG

X

X

 

X

     

SHARAN

X

X

       

QI

X

 

X

X

X

X

X

X

X

EQUAL

         
  1. *SL: Synthetic Lethal; GO: Gene Ontology; DDI: Domain-domain Interactions; Nbrhd: Neighborhood
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BMC Bioinformatics

ISSN: 1471-2105

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