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Table 5 Fractional scores of the confidence assignment schemes in each of the five quality measures*.

From: A direct comparison of protein interaction confidence assignment schemes

Probability Scheme

Gene Ontology (SC)

Interaction Conservation (SC at 1 × 10-10)

Gene Expression (SC)

SNR

Conservation Coherency (SC)

DENG: Deng et al.

1.00

0.76

--

1.00

1.00

BADER_HIGH: Bader et al. (high)

--

1.00

--

0.77

0.74

BADER_LOW: Bader et al. (low)

0.86

0.98

1.00

0.77

0.64

SHARAN: Sharan et al.

0.96

1.00

0.27

0.78

0.89

DEANE: Deane et al.

0.78

0.73

--

0.57

0.80

QI: Qi et al.

--

0.58

--

0.74

0.57

  1. *Fractional scores are between [0,1] with 1 performing the best (indicated in bold for each measure). Cells with a dash (-) indicate circularity, i.e., the measures used as (full or partial) input to the corresponding probability schemes. SC: Spearman Correlation; SNR: Signal to Noise Ratio.