Skip to main content

Table 2 The number of proteins in a test set of novel folds, general and non-redundant test sets in Δ v 1 v 2 , k n o w n MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqqHuoardaqhaaWcbaGaemODay3aaSbaaWqaaiabigdaXaqabaaaleaacqWG2bGDdaWgaaadbaGaeGOmaidabeaaliabcYcaSiabdUgaRjabd6gaUjabd+gaVjabdEha3jabd6gaUbaaaaa@3B62@ which are selected from the known SCOP folds of v2 with at least one protein chain in v1.

From: A fast SCOP fold classification system using content-based E-Predict algorithm

test set

size (#proteins)

test set

size (#proteins)

test set

size (#proteins)

Δ v 1.55 , g e n e r a l v 1.57 , k n o w n MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqqHuoardaqhaaWcbaGaemODayNaeGymaeJaeiOla4IaeGynauJaeGynauJaeiilaWIaem4zaCMaemyzauMaemOBa4MaemyzauMaemOCaiNaemyyaeMaemiBaWgabaGaemODayNaeGymaeJaeiOla4IaeGynauJaeG4naCJaeiilaWIaem4AaSMaemOBa4Maem4Ba8Maem4DaCNaemOBa4gaaaaa@4AF7@

4192

Δ v 1.55 , n o n − r e d u n d a n t v 1.57 , k n o w n MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqqHuoardaqhaaWcbaGaemODayNaeGymaeJaeiOla4IaeGynauJaeGynauJaeiilaWIaemOBa4Maem4Ba8MaemOBa4MaeyOeI0IaemOCaiNaemyzauMaemizaqMaemyDauNaemOBa4MaemizaqMaemyyaeMaemOBa4MaemiDaqhabaGaemODayNaeGymaeJaeiOla4IaeGynauJaeG4naCJaeiilaWIaem4AaSMaemOBa4Maem4Ba8Maem4DaCNaemOBa4gaaaaa@52F5@

442

-

-

Δ v 1.57 , g e n e r a l v 1.59 , k n o w n MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqqHuoardaqhaaWcbaGaemODayNaeGymaeJaeiOla4IaeGynauJaeG4naCJaeiilaWIaem4zaCMaemyzauMaemOBa4MaemyzauMaemOCaiNaemyyaeMaemiBaWgabaGaemODayNaeGymaeJaeiOla4IaeGynauJaeGyoaKJaeiilaWIaem4AaSMaemOBa4Maem4Ba8Maem4DaCNaemOBa4gaaaaa@4AFF@

4047

Δ v 1.57 , n o n − r e d u n d a n t v 1.59 , k n o w n MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqqHuoardaqhaaWcbaGaemODayNaeGymaeJaeiOla4IaeGynauJaeG4naCJaeiilaWIaemOBa4Maem4Ba8MaemOBa4MaeyOeI0IaemOCaiNaemyzauMaemizaqMaemyDauNaemOBa4MaemizaqMaemyyaeMaemOBa4MaemiDaqhabaGaemODayNaeGymaeJaeiOla4IaeGynauJaeGyoaKJaeiilaWIaem4AaSMaemOBa4Maem4Ba8Maem4DaCNaemOBa4gaaaaa@52FD@

431

Δ v 1.57 v 1.59 , n o v e l MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqqHuoardaqhaaWcbaGaemODayNaeGymaeJaeiOla4IaeGynauJaeG4naCdabaGaemODayNaeGymaeJaeiOla4IaeGynauJaeGyoaKJaeiilaWIaemOBa4Maem4Ba8MaemODayNaemyzauMaemiBaWgaaaaa@4092@

94

Δ v 1.59 , g e n e r a l v 1.61 , k n o w n MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqqHuoardaqhaaWcbaGaemODayNaeGymaeJaeiOla4IaeGynauJaeGyoaKJaeiilaWIaem4zaCMaemyzauMaemOBa4MaemyzauMaemOCaiNaemyyaeMaemiBaWgabaGaemODayNaeGymaeJaeiOla4IaeGOnayJaeGymaeJaeiilaWIaem4AaSMaemOBa4Maem4Ba8Maem4DaCNaemOBa4gaaaaa@4AF5@

4547

Δ v 1.59 , n o n − r e d u n d a n t v 1.61 , k n o w n MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqqHuoardaqhaaWcbaGaemODayNaeGymaeJaeiOla4IaeGynauJaeGyoaKJaeiilaWIaemOBa4Maem4Ba8MaemOBa4MaeyOeI0IaemOCaiNaemyzauMaemizaqMaemyDauNaemOBa4MaemizaqMaemyyaeMaemOBa4MaemiDaqhabaGaemODayNaeGymaeJaeiOla4IaeGOnayJaeGymaeJaeiilaWIaem4AaSMaemOBa4Maem4Ba8Maem4DaCNaemOBa4gaaaaa@52F3@

468

Δ v 1.59 v 1.61 , n o v e l MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqqHuoardaqhaaWcbaGaemODayNaeGymaeJaeiOla4IaeGynauJaeGyoaKdabaGaemODayNaeGymaeJaeiOla4IaeGOnayJaeGymaeJaeiilaWIaemOBa4Maem4Ba8MaemODayNaemyzauMaemiBaWgaaaaa@4088@

10

Δ v 1.61 , g e n e r a l v 1.63 , k n o w n MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqqHuoardaqhaaWcbaGaemODayNaeGymaeJaeiOla4IaeGOnayJaeGymaeJaeiilaWIaem4zaCMaemyzauMaemOBa4MaemyzauMaemOCaiNaemyyaeMaemiBaWgabaGaemODayNaeGymaeJaeiOla4IaeGOnayJaeG4mamJaeiilaWIaem4AaSMaemOBa4Maem4Ba8Maem4DaCNaemOBa4gaaaaa@4AEB@

5226

Δ v 1.61 , n o n − r e d u n d a n t v 1.63 k n o w n MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqqHuoardaqhaaWcbaGaemODayNaeGymaeJaeiOla4IaeGOnayJaeGymaeJaeiilaWIaemOBa4Maem4Ba8MaemOBa4MaeyOeI0IaemOCaiNaemyzauMaemizaqMaemyDauNaemOBa4MaemizaqMaemyyaeMaemOBa4MaemiDaqhabaGaemODayNaeGymaeJaeiOla4IaeGOnayJaeG4mamJaem4AaSMaemOBa4Maem4Ba8Maem4DaCNaemOBa4gaaaaa@5209@

491

Δ v 1.61 v 1.63 , n o v e l MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqqHuoardaqhaaWcbaGaemODayNaeGymaeJaeiOla4IaeGOnayJaeGymaedabaGaemODayNaeGymaeJaeiOla4IaeGOnayJaeG4mamJaeiilaWIaemOBa4Maem4Ba8MaemODayNaemyzauMaemiBaWgaaaaa@407E@

190

Δ v 1.63 , g e n e r a l v 1.65 , k n o w n MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqqHuoardaqhaaWcbaGaemODayNaeGymaeJaeiOla4IaeGOnayJaeG4mamJaeiilaWIaem4zaCMaemyzauMaemOBa4MaemyzauMaemOCaiNaemyyaeMaemiBaWgabaGaemODayNaeGymaeJaeiOla4IaeGOnayJaeGynauJaeiilaWIaem4AaSMaemOBa4Maem4Ba8Maem4DaCNaemOBa4gaaaaa@4AF3@

5445

Δ v 1.63 , n o n − r e d u n d a n t v 1.65 , k n o w n MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqqHuoardaqhaaWcbaGaemODayNaeGymaeJaeiOla4IaeGOnayJaeG4mamJaeiilaWIaemOBa4Maem4Ba8MaemOBa4MaeyOeI0IaemOCaiNaemyzauMaemizaqMaemyDauNaemOBa4MaemizaqMaemyyaeMaemOBa4MaemiDaqhabaGaemODayNaeGymaeJaeiOla4IaeGOnayJaeGynauJaeiilaWIaem4AaSMaemOBa4Maem4Ba8Maem4DaCNaemOBa4gaaaaa@52F1@

494

Δ v 1.63 v 1.65 , n o v e l MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqqHuoardaqhaaWcbaGaemODayNaeGymaeJaeiOla4IaeGOnayJaeG4mamdabaGaemODayNaeGymaeJaeiOla4IaeGOnayJaeGynauJaeiilaWIaemOBa4Maem4Ba8MaemODayNaemyzauMaemiBaWgaaaaa@4086@

48

Δ v 1.65 , g e n e r a l v 1.67 , k n o w n MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqqHuoardaqhaaWcbaGaemODayNaeGymaeJaeiOla4IaeGOnayJaeGynauJaeiilaWIaem4zaCMaemyzauMaemOBa4MaemyzauMaemOCaiNaemyyaeMaemiBaWgabaGaemODayNaeGymaeJaeiOla4IaeGOnayJaeG4naCJaeiilaWIaem4AaSMaemOBa4Maem4Ba8Maem4DaCNaemOBa4gaaaaa@4AFB@

10521

Δ v 1.65 , n o n − r e d u n d a n t v 1.67 , k n o w n MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqqHuoardaqhaaWcbaGaemODayNaeGymaeJaeiOla4IaeGOnayJaeGynauJaeiilaWIaemOBa4Maem4Ba8MaemOBa4MaeyOeI0IaemOCaiNaemyzauMaemizaqMaemyDauNaemOBa4MaemizaqMaemyyaeMaemOBa4MaemiDaqhabaGaemODayNaeGymaeJaeiOla4IaeGOnayJaeG4naCJaeiilaWIaem4AaSMaemOBa4Maem4Ba8Maem4DaCNaemOBa4gaaaaa@52F9@

736

Δ v 1.65 v 1.67 , n o v e l MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqqHuoardaqhaaWcbaGaemODayNaeGymaeJaeiOla4IaeGOnayJaeGynaudabaGaemODayNaeGymaeJaeiOla4IaeGOnayJaeG4naCJaeiilaWIaemOBa4Maem4Ba8MaemODayNaemyzauMaemiBaWgaaaaa@408E@

215

Δ v 1.67 , g e n e r a l v 1.69 , k n o w n MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqqHuoardaqhaaWcbaGaemODayNaeGymaeJaeiOla4IaeGOnayJaeG4naCJaeiilaWIaem4zaCMaemyzauMaemOBa4MaemyzauMaemOCaiNaemyyaeMaemiBaWgabaGaemODayNaeGymaeJaeiOla4IaeGOnayJaeGyoaKJaeiilaWIaem4AaSMaemOBa4Maem4Ba8Maem4DaCNaemOBa4gaaaaa@4B03@

5604

Δ v 1.67 , n o n − r e d u n d a n t v 1.69 , k n o w n MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqqHuoardaqhaaWcbaGaemODayNaeGymaeJaeiOla4IaeGOnayJaeG4naCJaeiilaWIaemOBa4Maem4Ba8MaemOBa4MaeyOeI0IaemOCaiNaemyzauMaemizaqMaemyDauNaemOBa4MaemizaqMaemyyaeMaemOBa4MaemiDaqhabaGaemODayNaeGymaeJaeiOla4IaeGOnayJaeGyoaKJaeiilaWIaem4AaSMaemOBa4Maem4Ba8Maem4DaCNaemOBa4gaaaaa@5301@

585

Δ v 1.67 v 1.69 , n o v e l MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqqHuoardaqhaaWcbaGaemODayNaeGymaeJaeiOla4IaeGOnayJaeG4naCdabaGaemODayNaeGymaeJaeiOla4IaeGOnayJaeGyoaKJaeiilaWIaemOBa4Maem4Ba8MaemODayNaemyzauMaemiBaWgaaaaa@4096@

86