A fast SCOP fold classification system using content-based E-Predict algorithm

BMC Bioinformatics

Table 4 The sequence redundancy in a set that contains 10 pairs of proteins, which are randomly sampled from $Δ_{v 1.67, n o n - r e d u n d a n t}^{v 1.69, k n o w n}$

pairs	pdb _id₁	super family _id₁	pdb _id₂	super family _id₂	sequence identity	sequence similarity
01	1osd _A	55008	1uta _A	110997	2.10%	3.50%
02	1ug 8_A	82708	1vm 0_A	82704	12.80%	26.80%
03	1v 5n _A	57889	1rq 8_A	75471	13.60%	23.50%
04	1veu _B	103196	1j 3m _A	103247	22.40%	34.20%
05	1tu 1_B	55724	1smb _A	55797	6.80%	10.80%
06	1thq _A	56925	1xfs _B	55961	18.10%	28.40%
07	1vki _B	55826	1sk 3_A	55846	17.70%	30.50%
08	1tf 1_D	55781	1pp 6_E	55676	10.30%	17.50%
09	1ucd _A	55895	1vkw _A	55469	9.00%	14.70%
10	1tt 4_A	55931	1vkp _A	55909	12.70%	21.80%
					Avg. 12.55%	Avg. 21.17%

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