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Figure 2 | BMC Bioinformatics

Figure 2

From: Improving the quality of protein structure models by selecting from alignment alternatives

Figure 2

(Left) Average increase in TM-score, for ranges of difficulty. Targets are binned according to the TM-score of the default Arby model. Within each bin the average increase in quality qim is plotted. Bins are enumerated horizontally, the two outer bins were concatenated with their neighbors as each contained less than 100 target samples. Models are selected from PVS using the SVM. For comparison the average increase in quality obtained on this benchmark set by performing loop modeling is 0.003. (Right) Maximum increase in TM-score, for the same ranges of difficulty. The maximum increase in quality max qim within each bin is visualized as a line above the box representing the average increase (which is the same as on the left side, just the scale is different).

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