Table 2 Negative validation set. The list of the protein pairs that our known not to interact. This list was used to evaluate PIPE's accuracy to detect protein interactions.

YAL003W

YDL232W

YCL004W

YDL168W

YLR170C

YNL137C

YAL047C

YBR243C

YCL009C

YDR077W

YLR170C

YOR346W

YAR071W

YCL030C

YCL018W

YDL078C

YLR170C

YPL048W

YBL068W

YBL099W

YCL025C

YDR079W

YLR170C

YPL147W

YBL068W

YLR170C

YCL040W

YDR086C

YLR195C

YMR203W

YBL068W

YNR006W

YCL050C

YCL057W

YLR195C

YNR006W

YBL068W

YPL029W

YCR005C

YDL022W

YLR244C

YMR203W

YBL079W

YBL090W

YCR021C

YCR053W

YLR244C

YPL147W

YBL079W

YBL099W

YCR094W

YMR170C

YMR011W

YMR203W

YBL079W

YKL122C

YDL028C

YDL066W

YMR011W

YNL137C

YBL079W

YMR203W

YDL055C

YBR243C

YMR011W

YOR025W

YBL079W

YNL137C

YDL067C

YDL212W

YMR011W

YPL048W

YBL079W

YPL147W

YDL142C

YDL159W

YMR011W

YPL147W

YBL079W

YPR133W-A

YDL236W

YDR086C

YMR203W

YNL029C

YBL084C

YBL090W

YDR001C

YDL137W

YMR203W

YNR043W

YBL084C

YBL099W

YDR044W

YCR014C

YMR203W

YOR025W

YBL084C

YLR170C

YDR144C

YAL003W

YMR203W

YPL048W

YBL084C

YNL137C

YGL055W

YLR170C

YMR203W

YPL147W

YBL090W

YGL055W

YGL055W

YNR006W

YMR261C

YNL137C

YBL090W

YKL122C

YHR041C

YDR538W

YMR261C

YNR006W

YBL090W

YLR170C

YIL021W

YBR177C

YMR261C

YOR321W

YBL090W

YMR203W

YKL122C

YKL181W

YMR261C

YPL147W

YBL090W

YOR321W

YKL122C

YLR170C

YMR261C

YPR133W-A

YBL090W

YPR133W-A

YKL122C

YLR195C

YNL029C

YNL137C

YBL099W

YGL055W

YKL122C

YMR203W

YNL029C

YNR006W

YBL099W

YKL122C

YKL122C

YNL137C

YNL029C

YOR025W

YBL099W

YLR170C

YKL122C

YOR346W

YNL029C

YPL147W

YBL099W

YNR006W

YKL122C

YPL048W

YNL137C

YNR043W

YBL099W

YOR346W

YKL122C

YPL147W

YNL137C

YOL136C

YBR208C

YCR048W

YKL181W

YLR170C

YNL137C

YOR025W

YBR218C

YDL077C

YKL181W

YMR203W

YNL137C

YPL147W

YBR236C

YCR011C

YKL181W

YNL137C

YNR006W

YOR025W

YBR237W

YDL090C

YLR170C

YMR203W

YNR006W

YPL048W

YBR248C

YDL194W