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Table 5 Set of protein complexes with previously reported internal structures. This list was used to evaluate the efficiency of PIPE to predict the internal architecture of protein complexes. Only the adjacent subunits are reported to be interacting.

From: PIPE: a protein-protein interaction prediction engine based on the re-occurring short polypeptide sequences between known interacting protein pairs

Protein A

Protein B

Protein C

YGR004W

YLR324W

YDL089W

YPR119W

YBR135W

YDL155W

YDR378C

YER112W

YJL124C

YMR197C

YOR036W

YBL050W

YPR185W

YGR120C

YPR105C

YKL103C

YAL034W

YGR120C

YBL026W

YDL160C

YEL015W

YLR423C

YGR113W

YIL144W

YDR084C

YGL198W

YPL095C

YLR045C

YCL029C

YER016W