Table 1 Partition of genes and putative regulatory sequences between the two signs of Mode 2 loadings. Numbers (#) of genes (gene_stable_ids) and of putative regulatory sequences (CNSs) in the whole datasets, in their common parts, and in their partitions differing by the sign of loadings of Mode 2. The ratios of split used as the general population odds for down-regulation are shown in bold.
Dataset | Number of genes, of which #negative:#positive = ratio of split | Number of genes with CNSs, of which #negative:#positive = ratio of split | Number of CNSs, of which #negative:#positive = ratio of split (odds) |
|---|---|---|---|
Neuronal dataset (N) | 1824 860:964 = 1:1.12 | 897 422:475 = 1:1.13 | 2516 1210:1306 = 1:1.08 |
Hippocampal dataset (H) | 1885 1051:834 = 1.26:1 | 764 359:405 = 1:1.13 | 2021 906:1115 = 1:1.23 |
Common between N and H | 453 | 223 | 562 |
Myoblast dataset (M) | 2008 1052:956 = 1.1:1 | 918 451:467 = 1:1.04 | 2733 1201:1532 = 1:1.27 |
Common between H and M | 454 | 216 | 610 |