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Table 3 MAD for mixing experiments 1 and 2. Pooled MAD of the computed relative mRNA proportions in mixing experiments 1 and 2 for different chip evaluation methods. The MAD is calculated with respect to the target values p M = 0.75, p F = 0.11, p N = 0.14 (mix 1) and p M = 0.86, p F = 0.11, p N = 0.03 (mix 2). 'MAS-S mean' and 'MAS-C mean' denote the means with respect to the four preceeding normalization methods. Notation according to Table 1.

From: Robust computational reconstitution – a new method for the comparative analysis of gene expression in tissues and isolated cell fractions

Chip evaluation method mix 1 mix 2
   lr   lr
MAS-S t 1.2 2.2 0.8 1.3
MAS-S t clr 2.5 4.6 1.8 1.7
MAS-S t q 3.3 4.3 1.1 1.1
MAS-S t c 1.6 2.5 0.8 2.0
MAS-S mean 2.2 3.4 1.1 1.5
MAS-C t 0.6 1.9 0.5 1.1
MAS-C t clr 2.1 4.7 0.9 1.8
MAS-C t q 2.2 5.4 0.8 1.8
MAS-C t c 2.0 1.9 1.2 1.0
MAS-C mean 1.7 3.5 0.9 1.4
R.MA 9.7 6.8 2.6 2.9
MBEI 8.2 5.4 3.3 1.2
MBEI-GP 6.6 5.2 1.1 1.0