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Figure 2 | BMC Bioinformatics

Figure 2

From: Text mining of full-text journal articles combined with gene expression analysis reveals a relationship between sphingosine-1-phosphate and invasiveness of a glioblastoma cell line

Figure 2

Schematic diagram of the text mining analysis pipeline. Full-text articles are downloaded and processed using the download agent GetItRight. The resulting HTML files are converted to XML. Biological entities (genes, proteins) and their relationships (activation, inhibition, etc.) are extracted from LexiQuest Mine (SPSS, Chicago, IL). The resulting patterns are stored in the text mining data warehouse. The text mining data is matched with results from a differential gene expression experiment.

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BMC Bioinformatics

ISSN: 1471-2105

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