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Table 4 Experimental conditions used to obtain the data set analyzed in "the ethanol response in E. coli" case study (see reference [16] for more details).

From: A novel data mining method to identify assay-specific signatures in functional genomic studies

Assay characteristics

Assay

Strain

Sugar

1% EtOH in the initial medium

2% EtOH challenge

1

KO11

Glucose

NO

NO

2

LY01

Glucose

NO

NO

3

KO11

Xylose

NO

NO

4

LY01

Xylose

NO

NO

5

KO11

Glucose

YES

NO

6

LY01

Glucose

YES

NO

7

KO11

Xylose

YES

NO

8

LY01

Xylose

YES

NO

9

KO11

Glucose

NO

YES

10

LY01

Glucose

NO

YES

11

KO11

Xylose

NO

YES

12

LY01

Xylose

NO

YES

  1. Gene expression was surveyed for 4,290 genes in a total of 12 different experimental conditions (i.e., assays).