From: A reinforced merging methodology for mapping unique peptide motifs in members of protein families
protein familya | UPM | Position | loop coverage (%)b | Molecular recognitionc | Refs |
---|---|---|---|---|---|
RNaseA d | Â | Â | Â | Â | Â |
Rnase1 | MDSDSSPSSSSTY# | 13–25 | 70 |  | [48] |
 | GQGNCYKSNSSMHITD# | 68–83 | 31 |  | [48] |
 | KERHI# | 102–106 | 0 |  | [48] |
 | FDASVEDST# | 120–128 | 50 |  | [48] |
Rnase2 | QQCTNAMQVI | 21–30 | 60 |  | [49] |
 | MTCPSNKTR# | 60–68 | 100 |  | [49] |
 | HSGSQ# | 73–77 | 50 | αRNase2e | [49],f |
 | TPANMFYI# | 101–108 | 0 |  | [49] |
Rnase3 | ISLNPPRCTIAMR# | 16–28 | 100 |  | [50] |
 | RCPHNRTLNN# | 61–70 | 90 | mAb 3C1e | [50],f |
 | RSRFRVP# | 73–79 | 29 |  | [50] |
 | INPGAQ | 86–91 | 83 |  | [50] |
 | YADRPGRRF# | 98–106 | 0 |  | [50] |
 | PRDSPRY# | 116–122 | 100 | D112-P123 Abe | [12, 50] |
Rnase4 | VHPEETGG# | 13–20 | 64 |  | [51] |
 | RKMTLYH | 32–38 | 86 |  | [51] |
 | IHEDIWNIR | 46–54 | 0 |  | [51] |
 | CSTTNIQ# | 57–63 | 100 |  | [51] |
 | EGVVK | 73–77 | 0 |  | [51] |
 | RDTGS# | 82–86 | 50 |  | [51] |
 | IASTRRVVI# | 97–105 | 0 |  | [51] |
Rnase5 | THFLT | 7–11 | 0 |  | [25] |
 | KAICEN# | 54–59 | 100 |  | [25] |
 | PHRENLRISKSSF# | 64–76 | 14 | protein-cell interactiong | [13, 25] |
 | WPPCQY# | 89–94 | 60 |  | [25] |
EGFR | Â | Â | Â | Â | Â |
ErbB | CQGTSN# | 31–36 | 50 |  | [14] |
 | LSNYDA | 144–149 | 0 |  | [14] |
 | SINATNI | 350–356 | 100 | EGF binding | [14] |
 | RTDLHAF | 414–420 | 100 |  | [14] |
 | TKQHGQF# | 430–436 | 100 |  | [14] |
 | TSGQKT# | 483–488 | 33 |  | [14] |
ErbB2 | HLDMLRHLYQ | 42–51 | 0 | αErbB2 N-terme | [33] Stratagene Cat: B50175 |
 | ILWKDIFHK | 144–152 | 100 |  | [33] |
 | GLGMEHL | 321–327 | 100 |  | [33] |
 | APLQPEQ | 367–373 | 100 |  | [33] |
 | HNGAYSL | 414–420 | 71 |  | [33] |
 | CFVHTVPWDQLFR | 452–464 | 100 |  | [33] |
ErbB3 | YIEKNDKLC# | 129–137 | 33 |  | [52] |
 | FAHEAECFSCH# | 524–534 | 0 |  | [52] |
MMP d | Â | Â | Â | Â | Â |
MMP1 | RGDHRD# | 66–71 | -g |  |  |
 | SHSTDIG# | 128–134 | - |  |  |
 | GRSQNPVQPI# | 162–171 | - |  |  |
 | WAVQGQN | 250–256 | - |  |  |
 | RTVKHI | 273–278 | - | αMMP1e | Santa Cruz Cat: sc-21731 |
 | YKRSM# | 304–308 | - |  |  |
 | MIAHD | 315–319 | - |  |  |
 | HGTRQYKF | 341–348 | - |  |  |
 | KTKRILTLQKAN# | 351–362 | - |  |  |
MMP3 | QWTKDTTGT# | 103–111 | 100 |  | [15] |
 | TDLTRFR | 145–151 | 100 |  | [15] |
 | TEPVP | 178–182 | - |  |  |
 | GTPANC# | 186–191 | - |  |  |
 | KSLRKLEP# | 218–225 | - | αMMP3d | Santa Cruz Cat: sc-21732 |
 | PKQIAE# | 324–329 | - |  |  |
Smad | Â | Â | Â | Â | Â |
Smad4 | MDNMSITNT | 1–9 | - |  |  |
 | TTNGAH | 62–67 | - | DNA binding | [20] |
 | KHVKYCQY | 110–117 | - |  |  |
 | IQTIQH | 179–184 | - |  |  |
 | HPGHYWPVH | 297–305 | - |  |  |
 | HKIYPSAYIK | 427–436 | 0 |  | [18] |
 | AISLSA | 481–486 | 0 |  | [18] |
 | GPDYPRQSI# | 510–518 | 100 | Ski binding | [18] |
 | EVLHTMPIADPQPL | 538–551 | 64 | TGFβreceptor binding | [18] |