Library Type | GIS-PET | ChIP-PET | ||
---|---|---|---|---|
Library ID | SHC012 | SHC013 | SHC016 | SHC019 |
Unique PETs | 135,757 | 145,138 | 640,844 | 582,253 |
Un-mapped PET | 33,097 | 34,648 | 183,314 | 166,764 |
   (un-mapping rate %) | 24.4 | 23.4 | 28.6 | 28.6 |
Mapped PET | 102,660 | 110,490 | 457,530 | 415,489 |
   (mapping rate %) | 75.6 | 76.1 | 71.4 | 71.4 |
PETs mapped to one location (PET1) | 83,089 | 88,850 | 422,145 | 382,788 |
   (PET1 rate% to unique PETs) | 61.2 | 61.2 | 65.9 | 65.7 |
   (PET1 rate % to mapped PETs) | 80.9 | 80.4 | 92.3 | 92.1 |
   (PET1 tag total counts) | 372,937 | 174,443 | 473,224 | 516,453 |
   (PET1 redundancy %)* | 77.7 | 49.1 | 12.1 | 24.3 |
PET1 mapped to known genes | 78,905 | 85,031 | NA | NA |
   (PET1 rate % to known genes) | 93.6 | 94.3 | NA | NA |
PETs mapped to multiple locations (% to all mapped PETs) | Â | Â | Â | Â |
   PET2 (%) | 7.67 | 8.16 | 1.87 | 1.94 |
   PET3 (%) | 2.33 | 2.37 | 0.68 | 0.71 |
   PET4 (%) | 1.2 | 1.26 | 0.41 | 0.44 |
   PET5 (%) | 0.64 | 0.72 | 0.29 | 0.28 |
   PET6 (%) | 0.43 | 0.48 | 0.23 | 0.2 |
   PET7 (%) | 0.31 | 0.31 | 0.17 | 0.17 |
   PET8 (%) | 0.18 | 0.18 | 0.15 | 0.15 |
   PET9 (%) | 0.16 | 0.15 | 0.11 | 0.12 |
   PET10 (%) | 0.11 | 0.11 | 0.09 | 0.09 |
   PET11+ (%) | 1.38 | 1.17 | 1.52 | 1.53 |