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Table 2 PET mapping to the genome

From: PET-Tool: a software suite for comprehensive processing and managing of Paired-End diTag (PET) sequence data

Library Type GIS-PET ChIP-PET
Library ID SHC012 SHC013 SHC016 SHC019
Unique PETs 135,757 145,138 640,844 582,253
Un-mapped PET 33,097 34,648 183,314 166,764
   (un-mapping rate %) 24.4 23.4 28.6 28.6
Mapped PET 102,660 110,490 457,530 415,489
   (mapping rate %) 75.6 76.1 71.4 71.4
PETs mapped to one location (PET1) 83,089 88,850 422,145 382,788
   (PET1 rate% to unique PETs) 61.2 61.2 65.9 65.7
   (PET1 rate % to mapped PETs) 80.9 80.4 92.3 92.1
   (PET1 tag total counts) 372,937 174,443 473,224 516,453
   (PET1 redundancy %)* 77.7 49.1 12.1 24.3
PET1 mapped to known genes 78,905 85,031 NA NA
   (PET1 rate % to known genes) 93.6 94.3 NA NA
PETs mapped to multiple locations (% to all mapped PETs)     
   PET2 (%) 7.67 8.16 1.87 1.94
   PET3 (%) 2.33 2.37 0.68 0.71
   PET4 (%) 1.2 1.26 0.41 0.44
   PET5 (%) 0.64 0.72 0.29 0.28
   PET6 (%) 0.43 0.48 0.23 0.2
   PET7 (%) 0.31 0.31 0.17 0.17
   PET8 (%) 0.18 0.18 0.15 0.15
   PET9 (%) 0.16 0.15 0.11 0.12
   PET10 (%) 0.11 0.11 0.09 0.09
   PET11+ (%) 1.38 1.17 1.52 1.53
  1. * PET1 Redundancy % = (1-Total unique PETs/Total high quality PETs) × 100. The number states the percentage of PET tags that are redundant in the category.